plastro.overlap.compute_phenotype_distances

plastro.overlap.compute_phenotype_distances(ad: AnnData, latent_space_key: str) → DataFrame

Compute pairwise phenotypic distances from latent space.

Parameters:

• ad (anndata.AnnData) – Annotated data object.

• latent_space_key (str) – Key for latent space coordinates in ad.obsm.

Returns:

Pairwise phenotypic distance matrix.

Return type:

pd.DataFrame