Index

C

cluster_switch_plasticity() (in module plastro.plasticity) compute_gini_plasticity_score() (in module plastro.overlap) compute_lineage_distances() (in module plastro.overlap), [1] compute_phenotype_distances() (in module plastro.overlap), [1]

compute_radius_overlaps() (in module plastro.overlap) compute_variable_radii_plasticity_score() (in module plastro.overlap) construct_phenotypic_graph() (in module plastro.plasticity), [1] construct_tree() (in module plastro.lineage_simulation), [1] create_random_binary_tree() (in module plastro.phenotype_simulation), [1]

G

generate_ad() (in module plastro) (in module plastro.phenotype_simulation), [1] get_distances_of_moves() (in module plastro.plasticity), [1]

get_k_nearest_neighbors() (in module plastro.overlap) gini_index() (in module plastro.overlap), [1] graph_from_connectivities() (in module plastro.plasticity), [1]

I

introduce_crispr_mutations() (in module plastro.lineage_simulation), [1]

M

module plastro.lineage_simulation plastro.overlap plastro.phenotype_simulation plastro.phylo plastro.plasticity

N

neighbor_joining() (in module plastro) (in module plastro.phylo), [1]

P

perform_random_walk() (in module plastro.plasticity), [1] plastro.lineage_simulation module plastro.overlap module plastro.phenotype_simulation module plastro.phylo module

plastro.plasticity module PLASTRO_overlaps() (in module plastro.overlap), [1] PLASTRO_score() (in module plastro) (in module plastro.overlap), [1] plot_change_in_phenotype() (in module plastro.plasticity) plot_leiden_transitions() (in module plastro.plasticity)

R

random_walk_plasticity() (in module plastro) (in module plastro.plasticity), [1]

rgba_to_hex() (in module plastro.phenotype_simulation), [1]

S

sample_branch() (in module plastro.phenotype_simulation), [1] simulate_lineage_tracing() (in module plastro) (in module plastro.lineage_simulation), [1]

simulate_realistic_dataset() (in module plastro) (in module plastro.phenotype_simulation), [1] subset_to_terminal_branches() (in module plastro.phenotype_simulation), [1]

V

visualize_walk() (in module plastro.plasticity), [1]