PLASTRO
Contents:
Installation
API Reference
Example Notebooks:
Plasticity Simulation Example
Next Steps
PLASTRO
Index
Index
C
|
G
|
I
|
M
|
N
|
P
|
R
|
S
|
V
C
cluster_switch_plasticity() (in module plastro.plasticity)
compute_gini_plasticity_score() (in module plastro.overlap)
compute_lineage_distances() (in module plastro.overlap)
,
[1]
compute_phenotype_distances() (in module plastro.overlap)
,
[1]
compute_radius_overlaps() (in module plastro.overlap)
compute_variable_radii_plasticity_score() (in module plastro.overlap)
construct_phenotypic_graph() (in module plastro.plasticity)
,
[1]
construct_tree() (in module plastro.lineage_simulation)
,
[1]
create_random_binary_tree() (in module plastro.phenotype_simulation)
,
[1]
G
generate_ad() (in module plastro)
(in module plastro.phenotype_simulation)
,
[1]
get_distances_of_moves() (in module plastro.plasticity)
,
[1]
get_k_nearest_neighbors() (in module plastro.overlap)
gini_index() (in module plastro.overlap)
,
[1]
graph_from_connectivities() (in module plastro.plasticity)
,
[1]
I
introduce_crispr_mutations() (in module plastro.lineage_simulation)
,
[1]
M
module
plastro.lineage_simulation
plastro.overlap
plastro.phenotype_simulation
plastro.phylo
plastro.plasticity
N
neighbor_joining() (in module plastro)
(in module plastro.phylo)
,
[1]
P
perform_random_walk() (in module plastro.plasticity)
,
[1]
plastro.lineage_simulation
module
plastro.overlap
module
plastro.phenotype_simulation
module
plastro.phylo
module
plastro.plasticity
module
PLASTRO_overlaps() (in module plastro.overlap)
,
[1]
PLASTRO_score() (in module plastro)
(in module plastro.overlap)
,
[1]
plot_change_in_phenotype() (in module plastro.plasticity)
plot_leiden_transitions() (in module plastro.plasticity)
R
random_walk_plasticity() (in module plastro)
(in module plastro.plasticity)
,
[1]
rgba_to_hex() (in module plastro.phenotype_simulation)
,
[1]
S
sample_branch() (in module plastro.phenotype_simulation)
,
[1]
simulate_lineage_tracing() (in module plastro)
(in module plastro.lineage_simulation)
,
[1]
simulate_realistic_dataset() (in module plastro)
(in module plastro.phenotype_simulation)
,
[1]
subset_to_terminal_branches() (in module plastro.phenotype_simulation)
,
[1]
V
visualize_walk() (in module plastro.plasticity)
,
[1]